Foxtail Millet Stress
Associated Protein Gene SiSAP4 Enhances Drought
Stress Tolerance in Transgenic Arabidopsis
Wenlu Li1, Liguang
Zhang1, Faheeda Soomro2, Pingyi Guo1,
Xiangyang Yuan1* and Yixue Wang2*
1College of Agronomy, Shanxi Agricultural University, Jinzhong 030801,
China
2International Center for Chemical and Biological Sciences, University
of Karachi, Karachi 75270, Pakistan
3College of Life Sciences, Shanxi Agricultural University, Jinzhong
030801, China
*For correspondence: yuanxiangyang200@163.com;
ciciwyx@163.com
Received 14 September 2020; Accepted 22 October 2020; Published
10 January 2021
Abstract
Abiotic stresses like drought affect plant growth and crop yield with
climate change worsening. Stress associated proteins (SAPs), as the zinc finger
proteins with A20/AN1 domain, play an important role in regulating abiotic
stress response. As a typical summer dryland grain crop in the north of China, foxtail
millet has the characteristics of drought resistance, making it a valuable
resource for anti-stress gene exploitation and utilization. In this study, SiSAP4 gene was cloned from foxtail millet variety
Yugu 1. Analysis showed that SiSAP4
gene was expressed in roots, stems and leaves at seedling stage, and the
highest expression level was detected in leaves. Expression patterns under
different stress conditions showed that expression level of SiSAP4 gene was significantly
up-regulated under drought stress, suggesting it may be involved in drought
stress response. Subcellular localization indicated that SiSAP4 was present in the nucleus and cytoplasm. It was revealed
that SiSAP4 had no function in
transcriptional activation in the yeast system. Overexpression of SiSAP4 in transgenic Arabidopsis resulted in enhanced
tolerance to drought stress, which was simultaneously demonstrated by increased
expression of a broad range of stress response genes. Based on those results, SiSAP4 has the potential to be used in
transgenic breeding to improve drought stress tolerance in other crops. © 2021
Friends Science Publishers
Keywords: Foxtail millet; SiSAP4; Drought tolerance;
Transgenic Arabidopsis
Introduction
Plants are mostly affected with abiotic stresses such as high
temperatures, waterlogging, salt and drought stress. During the process of
evolution, plants formed complex regulation network mechanism in response to
environmental challenges. Plants can be regulated at molecular and cellular
levels to survive adverse environmental events (Hirayama and Shinozaki 2010; Shi et al. 2015). This regulatory network relies on transcriptional
factors to activate downstream target genes in response to environmental stimulus
(Zhang et al. 2012; Chakraborty et al. 2015). Zinc finger proteins contain numerous
functional proteins that play major roles as transcriptional factors, protein
modification enzymes and RNA-binding proteins that protect cells against
environmental stresses (Zhang et al.
2014; Baek et al. 2015; Wang et al. 2019; Han et al. 2020). Stress associated proteins (SAPs) belong to A20/AN1 zinc finger proteins involved in pathways for plant growth and development and
in abiotic stress tolerance.
The SAP gene family is broadly
present across plant species. Until now, many SAP genes have been identified. OsiSAP1
was the first member among this gene family to be studied (Giri et al. 2013). OsiSAP1 overexpression has been found to enhance the resistance of
transgenic tobacco to high salinity, low temperature and drought condition during germination
and seedling stages (Mukhopadhyay et al. 2004). It has been shown
that OsiSAP8 can be induced by a variety of adverse stresses,
namely heat, cold, salt, desiccation, submergence, wounding and heavy metals. Overexpression
of OsiSAP8 showed no significant reduction in rice yield
with high salinity and drought stresses at flowering stage (Kanneganti and Gupta 2008). AtSAP5 can improve the tolerance of transgenic
cotton to heat stress by regulating the expression of genes related to water
deficit and heat stress protecting the photosystem Ⅱ complex in photosynthesis (Hozain et al. 2012). TaSAP5 can function as E3 ubiquitin ligase, which can ubiquitinize
and degrade DRIP protein to increase the accumulation of DREB2A protein,
activate the expression of downstream genes, and improve the drought resistance
of wheat (Zhang et al. 2017). In
addition, SAP genes have been
reported in maize, sorghum, tomato, medicago,
banana, aeluropus littoralis and
other crops, where expression responses under stress conditions were determined
and functional validation using transgenic systems performed (Solanke et al.
2009; Saad et al. 2010; Xuan et al. 2011; Charrier et al. 2012; Sreedharan et al. 2012; Wang et al. 2013).
Foxtail millet
(Setaria italica L.) originated from
northern China and has been an important dryland grain crop. Foxtail millet not only has the
characteristics of strong adaptability to drought and infertility, but also has
a small genome size, genetic diversity and short life cycle. Therefore, it can
be a valuable resource for abiotic stress resistant gene exploration (Muthamilarasan
and Prasad 2015; Yang et al. 2020).
At present, the research on functional
genomic data of foxtail
millet including the annotation and functional characterization of genes
involved in abiotic stress responses has been not analyzed. In this study, SiSAP4 was cloned from Yugu 1.
Expression profile of this gene was analyzed in foxtail millet and the function validated through transfer
of the gene to Arabidopsis.
Materials and Methods
Plant treatment and growing
conditions
Foxtail millet variety “Yugu 1” was used in this study. The millet
seeds were planted in vermiculite: nutrient soil 1:1 for three weeks at 23°C with a 16/8 h (light/dark) photoperiod in the chamber. The leaves, stems and roots of the seedlings were taken and utilized
to analyze the expression levels of the target gene in different tissues. To analyze the expression levels of target gene
in variable stress conditions, millet seedlings with uniform
growth at three weeks were selected for stress treatments (Min et al.
2013). These millet seedlings were exposed to the
following stress treatments: 6% PEG 6000, 100 mM NaCl and low temperature (4°C). Leaf samples were collected at 0.5, 1, 3, 6, 9, 12
and 24 h after stress treatment, respectively. All samples were stored at -80°C at once.
Transgenic studies were
conducted on Arabidopsis thaliana ecotype
Col-0 with the chamber condition as: temperature – 23°C; photoperiod – 16/8 h
(light/dark) and relative humidity – 65%. To study the expression pattern of water
deficit stress response genes both wild type (WT) and transgenic Arabidopsis were grown on MS medium
supplemented with 250 mM mannitol for 3 h.
Isolation of SiSAP4 gene and sequence analysis
The full-length cDNA of SiSAP4
was amplified using primers SiSAP4 (forward primer, 5´- AGTAGTCATGGAACACAAGG -3´; reverse primer, 5´- CTTGCAGATCACAACCCATC -3´). pEASY-Blunt
vectors (TransGen, Beijing) were used for PCR product ligation after
purification. After successful transformation, the positive clones were picked
for sequencing. The amino acid composition, molecular
weight and isoelectric point of SiSAP4
were predicted by online analysis software ProtParam tool (https://web.expasy.org/protparam/). The protein sequence of SiSAP4 was
used as query in a BLASTP program by collecting highly similar sequences to
study relationship between SiSAP4
with other family members from NCBI website. Alignment of sequences was performed
by DNAMAN to check similarity and phylogenetic tree was built by
neighbor-joining method with 1000 bootstrap replicates using MEGA5.0 (Tamura et
al. 2011).
Quantitative real-time PCR
Total RNA was isolated from foxtail millet seedlings and Arabidopsis plants using RNAprep Pure
Plant Kit (Tiangen, Beijing) as manufacturer’s instructions. The cDNA was
synthesized from RNA template after treatment with DNaseI using Fast Quant RT Kit
(Tiangen, Beijing). To check the level of gene expression quantitative real-time PCR (qRT-PCR) was done. The internal control SiActin (forward primer, 5´- GGCAAACAGGGAGAAGATGA -3´; reverse primer, 5´- GAGGTTGTCGGTAAGGTCACG -3´) and AtActin2 (forward primer, 5´-AGCACTTGCACCAAGCAGCATG-3´;
reverse primer, 5´-ACGATTCCTGGACCTGCCTCATC-3´) were utilized to determine the
relative transcript level of target genes in the Arabidopsis and foxtail millet. The qRT-PCR was done in three replicates with an
ABI Prism 7500 system consuming the SYBR Green Master Mix kit (TaKaRa, Japan).
The relative gene expression levels were calculated by the 2-△△CT method (Schmittgen and Livak 2008).
Subcellular localization of SiSAP4 protein
Agrobacterium mediated transformation was performed in tobacco
leaves using strain GV3101 by making gene construct between (pCAMBIA1300- SiSAP4-GFP)
and control (pCAMBIA1300-GFP). This was kept for incubation at 25°C with a 16/8
h (light/dark) photoperiod for 2 d and fluorescence signals were checked by
confocal laser scanning microscope.
Generation of Arabidopsis transgenic plants
The full-length cDNA of SiSAP4 gene was inserted between
XbaI and KpnI position (forward
primer, 5´- TGCTCTAGAATGGAACACAAGGAGGCG -3´; reverse primer, 5´- CGGGGTACCGATCTTGTCGAGCTTCTC
-3´, XbaI and KpnI sites underlined) of the pCAMBIA1300 vector. Prepared gene
construct was inserted into GV3101 strain of Agrobacterium tumefaciens and then transformed into Arabidopsis using floral infiltration (Clough and Bent 1998). After hygromycin
resistance screening and PCR detection, T3 homozygous transgenic
lines were obtained and three lines were randomly selected for subsequent
experiments.
Stress tolerance assays of
transgenic plants
To observe the effect of osmotic stress on
transgenic Arabidopsis, 7-d-old
seedlings were transplanted to MS medium with 0 or 250 mM mannitol for 10 d and
then phenotypes were observed. The primary root length of five transgenic plants
and control (WT) were calculated. To further investigate the drought stress tolerance
of transgenic Arabidopsis, 7-d-old
seedlings were grown in plates filled with mixture of soil, well-watered and
kept in growth chamber under short day conditions (12/12 light/dark) without
watering. After a water-withholding period and then re-watering for 3 d, the survival
rate of transgenic plants and control (WT) were calculated. The abiotic stress-related physiological
characterization of transgenic Arabidopsis,
including cell membrane stability (CMS) and water loss rate was measured (Mao et al. 2010).
Expression analysis of the stress
response genes
The expression level of stress response genes in transgenic
Arabidopsis was analyzed by qRT-PCR.
Arabidopsis seedlings were subjected to the MS medium with 250 mM mannitol
for 3 h and the tissue samples were harvested. Based on the conserved regions
of stress response genes, specific primers were designed to detect the
expression level (Supplementary Table S1).
Transcriptional activity
assay
For transcriptional activity assays GAL4-based
Matchmaker Two-Hybrid System (Clontech) with AH109 strain of Saccharomyces cerevisiae were utilized.
For cloning purpose, pGBKT7 vector was used by inserting full length ORF of SiSAP4 and two truncations to make fusion with GAL4-binding domain and then
transformed to AH109 yeast strain and kept for culturing until optical density at
600 nm reach to 1.0. Later, the suspension was grown into SD/-Trp and SD/-Trp/-His medium. An empty pGBKT7 vector
was used as control.
Statistical analysis
Three replications of each sample were utilized
for the experiments. The data represented is the mean ± SD. To study normal and
drought stress conditions parameters data were analyzed by two tailed Student’s
t-test method. The significant differences were represented at the level P < 0.05 or P < 0.01.
Results
Isolation and sequence
analysis of SiSAP4
The target gene SiSAP4 was isolated from foxtail millet. The full length of SiSAP4 was 516 bp, encoding 171 amino
acids. The predicted molecular weight was 18.21 kD, and the isoelectric point
was 8.28. Protein structure prediction SiSAP4
contained an A20 and an AN1 domain. Sequence alignment showed
that the amino acid sequences of the two domains of SiSAP4 were highly similar to those of other species (Fig. 1A). Phylogenetic evolutionary analysis showed that SiSAP4 can be classified in other
monocotyledonous plants, including sorghum, Zea
mays, rice, wheat and Brachypodium
distachyon (Fig. 1B).
Expression patterns of SiSAP4 in various tissues and under
abiotic stresses
The expression patterns of SiSAP4 in various tissues at seedling stage were examined by
qRT-PCR. The transcript of SiSAP4 was
identified in leaf, stem and root. The highest expression levels were observed in
leaf tissues. The lowest expression was checked in root (Fig. 2A).
Hence, the current research mainly focused on the leaf tissues for the
consequent analyses.
Expression levels of SiSAP4 detected under different stress
treatments, including PEG, salt and cold showed that its expression was significantly
activated by PEG, but relatively slightly by salt and cold (Fig. 2D). Under PEG
conditions, the expression levels of SiSAP4
reached a peak at 1 h and
maintained to 3 h, with the corresponding maxima being 4.2 greater than the
control. Under high salinity conditions, the expression levels of SiSAP4 firstly decreased and then
increased gradually, reaching a peak at 9 h, 1.5 greater than the control. At
low temperature, the expression of SiSAP4
showed two small peaks at 0.5 h and 12 h, both 1.5 times higher than the
control.
Subcellular localization of SiSAP4
Subcellular localization of SiSAP4 was observed in tobacco leaves. The
construct SiSAP4-GFP fusing protein
was driven by the CaMV 35S promoter. The green fluorescence was observed in the
cytoplasm, cell membrane and nucleus in tobacco leaf epidermal cells using fluorescence
microscopy. Hence, it was found that SiSAP4-GFP
was located in the cytoplasm, cell membrane and nucleus (Fig. 3).
Overexpression of SiSAP4 in Arabidopsis to enhanced drought stress tolerance
Three transgenic homozygous T3 Arabidopsis lines were selected randomly to study the role of SiSAP4 under abiotic stress. Variable level of expression observed
in SiSAP4 transgenic lines though it
was remarkable higher than expression in WT plants (Fig. 4B). The expression level of SiSAP4 was significantly up-regulated
under osmotic stress. The 7-day-old transgenic Arabidopsis and WT were placed in MS medium with 250 mM mannitol.
Fig. 1: Sequence alignment of SiSAP4 and SAPs in various plant species. (A) Alignment of SAPs from different plant species. ACG26325.1 from Zea mays, AFK93416.1 from Triticum aestivum, XP_021315499.1 from Sorghum bicolor, XP_015627216.1 from Oryza sativa Japonica Group,
XP_003547098.1 from Glycine max,
XP_016464057.1 from Nicotiana tabacum,
XP_016669486.1 from Gossypium hirsutum,
XP_024632562.1 from Medicago truncatula.
Common identical amino acid residues are shaded black. The conserved A20 domain
and AN1 domain are marked under the alignment with lines. (B) Construction phylogenetic tree of SAPs
using neighbor-joining method with 1000 bootstrap replicates by MEGA5.0. SiSAP4 is marked with red dots
Fig. 2: Expression patterns of SiSAP4. (A) Tissue expression
patterns of SiSAP4 at seedling stage.
L, leaf; R, root; S, stem. (B)
Relative expression of SiSAP4 under
polyethlene glycol-6000 (PEG) treatment. (C)
Relative expression of SiSAP4 under
NaCl treatment. (D) Relative expression
of SiSAP4 under cold (4°C) treatment.
Means were calculated from three independent experiments
After 10 days, the phenotype of transgenic Arabidopsis and WT was basically the
same in MS medium. The growth of transgenic Arabidopsis and WT both were inhibited
in MS medium with 250 mM mannitol, however, the growth of transgenic Arabidopsis was less inhibited (Fig. 4A).
The length of primary root of transgenic
Fig. 3: Subcellular localization of SiSAP4 in tobacco leaf cells. The fusion construct (35S::SiSAP4::GFP) was transiently expressed in tobacco epidermal
cells. Empty vector (35S::GFP) was used as control. Scale bar=50 μm
Fig. 4: Overexpression of SiSAP4 improves osmotic stress tolerance in transgenic Arabidopsis. (A) Phenotypes of three SiSAP4
transgenic lines (L1–3) and wild type (WT) under osmotic stress. (B) The expression level of SiSAP4 in three overexpressing Arabidopsis lines. (C) Comparison of primary root lengths of SiSAP4 overexpressing Arabidopsis
lines. **, P < 0.01
Arabidopsis
was significantly higher
than WT (Fig. 4C).
To further verify the
function of SiSAP4 under drought stress, the 7-day-old transgenic Arabidopsis and WT were planted in nutrient soil for drought
stress treatment. Seedling survival percentage was calculated after rewatering
for three days, and it was significantly higher (56–69%) for transgenic lines
than WT (17%) (Fig. 5A–B). There are certain physiological changes observed in
plants due to drought stress. CMS of SiSAP4 transgenic plants was observed to be higher than
WT (Fig. 5C). Water loss assay was performed in 8-h detached-rosette of 4 weeks
old SiSAP4-transgenic overexpressed Arabidopsis plants and WT. The higher water loss rate was observed in WT than the
transgenic plants (Fig. 5D).
SiSAP4 enhances expression of abiotic stress response
genes in transgenic plants
Phenotypes assays indicated that SiSAP4 transgenic
lines had enhanced tolerance to drought stress. Plants established intricate
cellular signaling mechanism to manage the drought stress. In this study, it
was further
Fig. 5: Overexpression of SiSAP4 improves drought stress tolerance in transgenic Arabidopsis. (A) Phenotypes
of three SiSAP4 transgenic lines
(L1–3) and wild type (WT) under drought stress. Three transgenic lines and WT
were planted in two rows, respectively. (B)
Comparison of seedling survival rate between transgenic plants and WT. (C) Comparison of cell membrane
stability (CMS) between transgenic plants and WT. (D) Comparison of water loss rates for detached rosettes between
transgenic plants and WT. **, P < 0.01
confirmed that several abiotic stress-responsive genes were up-regulated by SiSAP4. The expression level was checked in 8 abiotic stress related genes
(P5CS1, RD29A, RD29B, RD22, COR47, COR15a, RAB18 and KIN1) under drought stress and normal environment. It was inferred
that the expression level upregulated in P5CS1,
RD29A, RD29B, RD22, COR47 and KIN1 genes under water deficit conditions in transgenic plants by
1.3 to 6.9 fold than WT plants. However, compared to the WT, expression level
of transgenic plants in COR15a and RAB18 genes had no remarkable changes under both water
deficit and normal environment (Fig.
6).
SiSAP4 lacks transcriptional activation potential
To detect the transcriptional activation of SiSAP4, the full-length ORF of SiSAP4 and two truncations, according to
the two domains (A20 and AN1), were cloned into pGBKT7 to produce in-frame fusions
to GAL4-binding domain. The yeast containing two truncations and the
full-length ORF of SiSAP4 can grow in
SD-Trp medium, however, they don’t grow in SD-Trp/-His medium (Fig. 7). The above results showed that SiSAP4
and two domains did not have transcriptional activation.
Discussion
There are abundant combinations of the domains of
stress associated proteins (SAPs) in
plants, including A20+AN1, A20, AN1 and 2AN1 etc. The most common combination of the domains was A20+AN1 (Vij and Tyagi 2008). In this study, SiSAP4 included an A20 and an AN1 domain, being a typical domain
combination of SAP. In different plants, most members of the SAP gene family had
no introns (Jain et al. 2008). SiSAP4
also had no introns, suggesting that it can be rapidly transcripted and
expressed to perform biological functions.
Numerous studies show that the plant SAP gene family is constitutively
expressed. For example, the transcript of TaSAP17-D
had been shown to be expression in various tissues at different development
stages and higher expression in leaves at seedling stage (Xu et al. 2018). In this study, expression
analysis in different tissues at seedling stage showed that the expression
levels of SiSAP4 were higher in
leaves than in stems and roots, suggesting that it mainly played its biological
role in leaves. The active and variable expression levels of SiSAP4 under different abiotic stresses
were assessed. SiSAP4 was
up-regulated in dehydration stress, suggesting that it played a major role in
coping with the drought stress rather than salt and cold stresses. Most members
of the SAP gene family were reported as positive regulators in the plant
drought stress responses, such as AlSAP,
MtSAP1 and
Fig. 6: Effect of overexpression of SiSAP4 in transgenic Arabidopsis on the expression of stress-responsive genes. Relative expression
levels of stress-responsive genes were determined by qRT-PCR in transgenic
plants and wild type (WT) under normal condition and osmotic stress. *, P < 0.05; **, P < 0.01
Fig. 7: Transcriptional activation activity assay of
SiSAP4. According to the amino acid
position of the conserved domain, transcriptional activation activity of SiSAP4 of the full-length and two truncations.
A20 domain truncation is 1-111 amino acid residues. AN1 domain
truncation is 112-171 amino acid residues
MusaSAP1 (Saad et al. 2012; Sreedharan
et al. 2012; Charrier et al. 2013). It was observed that SiSAP4 overexpressing plants possessed
longer roots in the osmotic stress. Meanwhile, survival percentage of
transgenic plants was improved in drought stress contrast to the WT plants.
Drought stress induces various biochemical and physiological change. CMS and
water loss rate were selected to monitor drought stress tolerance in the
present study. Plants with higher CMS often have enhanced tolerance to drought
stress (Farooq and Azam 2006). It was inferred from the study that SiSAP4 transformants showed higher CMS
under drought stress than the WT. Detached-leaf water loss rate is suggested as
an indicator of water status (Clarke et
al. 1989; Dhanda and Sethi 1998). In present research work the WT plants
showed higher detached-leaf water loss rate than SiSAP4 transgenic plants, that strongly shows that transgenic
plants had higher water retention capacity.
Plant signaling system during
stress response was quite complex and mostly interconnected. Drought is a major
abiotic stress to limit crop yields. Drought-related transcription factors can
activate the expression of many downstream genes about regulation and signal
transduction to improve plant stress resistance (Bartels and Sunkar 2005). The
present studies show that SAPs can regulate the expression of downstream genes,
especially those involved in stress responses (Wang et al. 2016). In this study, the overexpression of SiSAP4 upregulated a broad range of
stress responsive genes. It is inferred that the improved tolerances to drought
stress are major attributable to consistently and significantly enhanced
expression of stress responsive genes including P5CS1, RD29A,
RD29B, RD22, COR47 and KIN1. In contrast, no deviation in the expression of COR15a and RAB18 was
found in transgenic plants and WT suggesting the two genes are not involved in
the drought stress pathway affected by SiSAP4.
Taken together, SiSAP4 can be used as a candidate gene to play a role in crop
resistance to drought stress. Interestingly, we found that SiSAP4 lacks transcriptional activation potential. It was speculated
that SiSAP4 could work with other
proteins to activate the expression of many downstream genes.
Conclusion
According to our findings, we suggested that the improved tolerance to
drought stress by SiSAP4 overexpressing
plants was due to the up-regulation expression of abiotic stress
related genes. The SiSAP4
gene could be instrumental in improving drought stress tolerance in foxtail
millet and other plants.
Acknowledgements
This work was supported by the System of National Modern Agriculture
Technology (CARS-06-13.5-A28).
Author Contributions
Wenlu
Li and Liguang Zhang designed and conducted the experiments; Faheeda Soomro and
Pingyi Guo analyzed the experimental data; Xiangyang Yuan and Yixue Wang helped
conceiving the study and participated in manuscript writing.
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